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Write code in unfamiliar territory with AI
I used Claude to build a Chrome extension to add a post-to-Bluesky button on bioRxiv. I've never written Javascript or a Chrome extension before. It…
16 hrs ago
Weekly Recap (Jan 2025 part 2)
Autonomous microbial sensors for detecting TNT in soil, genome size estimation from long reads, indexing + compressing GWAS summary stats, Clair3-RNA…
Jan 10
Gene Info Custom GPT
Gene Info: a custom GPT that takes a list of gene symbols and provides summary information, gene ontology terms, and provides contextual information…
Jan 6
Weekly Recap (Jan 2025, part 1)
Directed evolution by a protein language model, AI learning to run transcript assemblers, a review/introduction to pangenomics, Alphafold2 refinement…
Jan 3
December 2024
Bluesky conversation analysis with local and frontier LLMs with R/Tidyverse
Summary, translation, and sentiment analysis of Bluesky posts on a topic using atrrr, tidyverse/ellmer, and mlverse/mall with Claude and other open…
Dec 30, 2024
1
The Enlightenment Conservatory
A parable of scientific publishing, open access, and preprints
Dec 23, 2024
What I'm reading: de-extinction edition
Something a little different this week: book recommendations! De-extinction is a common theme across a few of the fiction and nonfiction books I read…
Dec 21, 2024
Weekly Recap (Dec 2024, part 3)
The Evo model for sequence modeling and design, AI agents in biomedical research, improving bioinfo software with teamwork, VCF manipulation, GWAS…
Dec 20, 2024
Video to audio to transcript to summary using local AI: whisperfile and llama3.3
Using local LLMs to extract and summarize audio transcripts from YouTube and podcasts. Examples: DESeq2 tutorial from YouTube, and the Nextflow Podcast.
Dec 18, 2024
Turn any webpage into markdown for LLM-friendly input
Add r.jina.ai/ in front of any URL to turn the entire page into Markdown for LLM-friendly input. Works on PDFs too.
Dec 16, 2024
Use an LLM to translate help documentation on-the-fly
The lang package overrides the ? and help() functions in your R session. If you are using RStudio or Positron, the translated help page will appear in…
Dec 14, 2024
Weekly Recap (Dec 2024, part 2)
Nextflow to web apps, variant analysis with DRAGEN, synthetic cis-regulatory elements, Nextflow for kinase ID+characterization, language model for…
Dec 13, 2024
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