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Weekly Recap (Sep 2024, part 5)
A new eQTL Nextflow workflow, spatial transcriptomics / scRNA-seq, guide assignment in CRISPR screens, on-/off-target analysis after CRISPR editing…
Sep 27
Llama 3.2 summaries of bioRxiv and medRxiv preprints with biorecap
The biorecap package can now summarize bioRxiv and medRxiv preprints, and uses the llama-3.2-3b model by default.
Sep 25
Learning in Public
A short essay on writing about what you're learning
Sep 24
Excalidraw: create and share workflow diagrams with end-to-end encryption
Excalidraw might be my new go-to open-source tool over draw.io for creating and sharing workflow diagrams. It's simple, fast, aesthetically pleasing…
Sep 22
Weekly Recap (Sep 2024, part 4)
Regulatory element mapping, phylogenetic tree analysis+viz, mapping cellular interactions with scRNA-seq, bioprospecting, transformers in single-cell…
Sep 20
Illuminate preprints with an AI-generated podcast discussion
Listen now | Google's new Illuminate tool takes a PDF from arXiv and generates a short podcast discussion on the paper's key points
Sep 16
43:17
Weekly Recap (Sep 2024, part 3)
What I'm reading this week in alignment and indexing millions of genomes at scale, gene age and family analysis and visualization, synthetic enhancers…
Sep 14
Create a free Llama 3.1 405B-powered chatbot on a GitHub repo in <1 min
How to create and deploy a free GPT4-class chatbot on HuggingFace Assistants for any GitHub repo, using an R package as an example, in less than 60…
Sep 11
Paired Ends Podcast
This is an experiment... ignore this post
Sep 11
0:16
Weekly Recap (Sep 2024, part 2)
What I'm reading this week in protein design with AlphaProteo, biases in polygenic risk scores, scRNA-seq HVG selection, reconstruction of a 4.2 billion…
Sep 6
PLANES: Plausibility Analysis of Epidemiological Signals
PLANES provides a set of methods for evaluating the plausibility of epidemiological signals and forecasts. The PLANES methods are available in the…
Sep 3
August 2024
Weekly Recap (Sep 2024, part 1)
What I'm reading this week in de-extinction and patent law, ATAC-seq benchmarking, large animal genomes, SV genotyping with long reads, cell…
Aug 30
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