Paired Ends
Subscribe
Sign in
Home
R
Python
Papers
TIL
AI
Archive
About
Latest
Top
Weekly Recap (Feb 2025, part 3)
T2T assembly, DNA language models for variant effect analysis, ortholog inference at scale, a foundation model of transcription across cell types…
Feb 27
Weekly Recap (Feb 2025, part 2)
Predicting RNA-seq coverage from DNA sequence with Borzoi, doing it faster with Flashzoi, phylogenetic inference from structure, prioritization in GWAS…
Feb 20
Exploring the bioRxiv API with R, httr2, rvest, tidytext, and Datawrapper
Collect metadata and publication details for >200k preprints over a 10 year period, investigate trends, and scrape full text for sentiment analysis
Feb 10
Weekly Recap (Feb 2025, part 1)
Neuropsychiatric PGS don't predict professional categories, pangenome graph-based GWAS, building and using single cell atlases, sketching sketching in…
Feb 7
January 2025
Technical blogging for growth and learning
Writing a technical blog improves your writing, forces you to learn new things, helps others and yourself, and helps your career. This post: why blog…
Jan 25
Weekly Recap (Jan 2025 part 3)
Visualizing pathogen dispersal, DNA language model benchmarks for regulatory DNA, polygenic risk prediction with GWAS summary stats, multimodal analysis…
Jan 24
AI in data science education
Listen now | Balancing growth with guidance: teaching data science in the age of AI assistants
Jan 15
10:47
Write code in unfamiliar territory with AI
I used Claude to build a Chrome extension to add a post-to-Bluesky button on bioRxiv. I've never written Javascript or a Chrome extension before. It…
Jan 12
Weekly Recap (Jan 2025 part 2)
Autonomous microbial sensors for detecting TNT in soil, genome size estimation from long reads, indexing + compressing GWAS summary stats, Clair3-RNA…
Jan 10
Gene Info Custom GPT
Gene Info: a custom GPT that takes a list of gene symbols and provides summary information, gene ontology terms, and provides contextual information…
Jan 6
Weekly Recap (Jan 2025, part 1)
Directed evolution by a protein language model, AI learning to run transcript assemblers, a review/introduction to pangenomics, Alphafold2 refinement…
Jan 3
December 2024
Bluesky conversation analysis with local and frontier LLMs with R/Tidyverse
Summary, translation, and sentiment analysis of Bluesky posts on a topic using atrrr, tidyverse/ellmer, and mlverse/mall with Claude and other open…
Dec 30, 2024
1
Share
Copy link
Facebook
Email
Notes
More
This site requires JavaScript to run correctly. Please
turn on JavaScript
or unblock scripts
