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October 2025

Bioconductor 3.22 Released
59 new software packages, updates for genomics, single-cell transcriptomics, spatial omics, QC tooling, core I/O, GFF/CIGAR handling, much more.
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Stephen Turner
Weekly Recap (Oct 31, 2025)
AI in science, Quarto, biodiversity, changed grant titles, new papers & preprints, Nextflow plugin registry, Via Scientific, R updates from R Data…
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Stephen Turner
Weekly recap (Oct 24, 2025)
Polyglot data science pipeline (R+Python+Julia) with rixpress, EuroBioC2025/BCN, Python packaging for R devs, Python in 2025, R/Pharma, DARPA, ASHG, the…
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Stephen Turner
Switching word processors with Zotero
Moving from Google Docs to Word will break your Zotero citations/bibliography linkages unless you do this first.
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Stephen Turner
Weekly recap (Oct 17, 2025)
Bioconductor on GPUs, tidyomics, Quarto 1.8, Anthropic red-teaming on AIxBio, PGS in the clinic, Shock Doctrine in genome engineering, GenAI for data…
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Stephen Turner
Most graduate students propose to do too much
Quoting Claus Wilke
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Stephen Turner
Asymmetries in Biosecurity
RAND Report: Why biology still favors the offense in biosecurity
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Stephen Turner
Positron: data explorer exports dplyr code
Positron allows you to export dplyr/SQL code for actions you take in the data explorer (like sorting and filtering)
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Stephen Turner
Weekly recap (Oct 10, 2025)
AI x biosecurity, R updates (Blaze, RWeekly, R Consortium), genome engineering & conservation, AI & labor, RAG, Lost Science, AI in medicine, ggplot2…
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Stephen Turner
All Roads Lead to Philosophy
Successively clicking the first link in a Wikipedia article almost always leads to Philosophy
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Stephen Turner
© 2025 Stephen Turner
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