Paired Ends
Subscribe
Sign in
Home
R
Python
Papers
TIL
AI
Archive
About
Latest
Top
Weekly Recap (April 2025, part 2)
Effector genes at GWAS hits, protein evolution, regulatory variant prediction, gene/genome duplication analysis, genomic foundation models, Nextflow…
1 hr ago
R 4.5.0 and Bioconductor 3.21
Faster package installation, import only the functions you want with use(), built-in Palmer penguins data, grep values shortcut, and lots of new…
Apr 17
Weekly Recap (April 2025, part 1)
Evo2, genomic foundationless models, the ggalign R package, ancestral reconstruction for ancient DNA, biodiversity genomics reviews, structural…
Apr 11
Build a local RAG application with Open WebUI to chat with your Zotero library
Demonstration using Mistral and Nomic Embed with Ollama and Open WebUI
Apr 5
March 2025
Weekly Recap (March 2025, part 2)
AI agents for biomedical reasoning, species tree inference, a spatial transcriptomics foundation model, biomedical research with LLMs, mapping cells…
Mar 28
uv, part 2: building and publishing packages
Using uv to create, manage, build, and publish a Python package to PyPI
Mar 24
Weekly Recap (March 2025, part 1)
Heritable polygenic editing, self-supervised learning in single-cell genomics, predictive modeling with tabular foundation models, ESM3, pangenome…
Mar 21
GUIs for Local LLMs with RAG
Running local LLMs with Ollama, LMStudio, Open WebUI, and others for private and secure chat, vibe coding, image analysis, and "chat with your…
Mar 14
uv, part 1: running scripts and tools
Over the past year I’ve heard a lot great things about uv, an extremely fast Python package and project manager, written in Rust.
Mar 3
February 2025
Weekly Recap (Feb 2025, part 3)
T2T assembly, DNA language models for variant effect analysis, ortholog inference at scale, a foundation model of transcription across cell types…
Feb 27
Weekly Recap (Feb 2025, part 2)
Predicting RNA-seq coverage from DNA sequence with Borzoi, doing it faster with Flashzoi, phylogenetic inference from structure, prioritization in GWAS…
Feb 20
Exploring the bioRxiv API with R, httr2, rvest, tidytext, and Datawrapper
Collect metadata and publication details for >200k preprints over a 10 year period, investigate trends, and scrape full text for sentiment analysis
Feb 10
Share
Copy link
Facebook
Email
Notes
More
This site requires JavaScript to run correctly. Please
turn on JavaScript
or unblock scripts
