Paired Ends
Subscribe
Sign in
Home
R
Python
Papers
TIL
AI
Archive
About
Latest
Top
Discussions
Plot Data Along a Genome with karyoploteR
Demos plotting genome density, per-base coverage, structural variation, GWAS Manhattan plots, combine multiple data types, gene expression results from…
Jul 7
•
Stephen Turner
12
Share this post
Paired Ends
Plot Data Along a Genome with karyoploteR
Copy link
Facebook
Email
Notes
More
2
Weekly Recap (July 2025, part 1)
Rust-based wgatools for alignment manipulation & analysis, Nextflow nf-core/scnanoseq for ONT scRNA-seq, Sawfish for long-read SV analysis, BINSEQ…
Jul 3
1
Share this post
Paired Ends
Weekly Recap (July 2025, part 1)
Copy link
Facebook
Email
Notes
More
June 2025
Moving from academia to biotech
Thoughts and advice on transitioning from a career in academia to industry biotech. 2.4k words, 11 minute reading time.
Jun 30
•
Stephen Turner
26
Share this post
Paired Ends
Moving from academia to biotech
Copy link
Facebook
Email
Notes
More
2
Weekly Recap (June 2025, part 2)
Interactive visualization of tabular data, shared foundations of gene expression and chromatin structure, fast protein structure searching with graph…
Jun 27
•
Stephen Turner
1
Share this post
Paired Ends
Weekly Recap (June 2025, part 2)
Copy link
Facebook
Email
Notes
More
uv, part 4: uv with Jupyter
Using uv with Jupyter: demo using polars and seaborn for analysis and visualization.
Jun 23
•
Stephen Turner
1
Share this post
Paired Ends
uv, part 4: uv with Jupyter
Copy link
Facebook
Email
Notes
More
Free AI courses from Google
Free short courses on GenAI, LLMs, responsible AI, image generation, encoder-decoder architectures, BERT, attention, transformers, ...
Jun 16
•
Stephen Turner
4
Share this post
Paired Ends
Free AI courses from Google
Copy link
Facebook
Email
Notes
More
Weekly Recap (June 2025, part 1)
PhyloSketch for drawing phylogenies, Uncalled4 for DNA/RNA modification detection, Severus for long read SV calling, CREsted for synthetic enhancer…
Jun 11
Share this post
Paired Ends
Weekly Recap (June 2025, part 1)
Copy link
Facebook
Email
Notes
More
The Modern R Stack for Production AI
Python isn't the only game in town anymore: R can interact with local and cloud LLM APIs, inspect and modify your local R environment and files…
Jun 2
•
Stephen Turner
13
Share this post
Paired Ends
The Modern R Stack for Production AI
Copy link
Facebook
Email
Notes
More
May 2025
Weekly Recap (May 2025, part 3)
Polars-bio, LiftOn, feature selection for scRNA-seq, STRkit for genotyping STRs with long reads, nf-core/detaxizer, Uncalled4, RegionScan, CREsted…
May 27
3
Share this post
Paired Ends
Weekly Recap (May 2025, part 3)
Copy link
Facebook
Email
Notes
More
Writing a book with Quarto
Turn a collection of RMarkdown documents into a book in <1 hour using Quarto
May 19
•
Stephen Turner
8
Share this post
Paired Ends
Writing a book with Quarto
Copy link
Facebook
Email
Notes
More
Weekly Recap (May 2025, part 2)
Comprehensive evolutionary modeling of human gene function, an AI reasoning model for rare disease diagnosis, an AI agent for scRNA-seq data…
May 15
3
Share this post
Paired Ends
Weekly Recap (May 2025, part 2)
Copy link
Facebook
Email
Notes
More
uv, part 3: Python in R with reticulate
Two demos using Python in R via reticulate+uv: (1) Hugging Face transformers for sentiment analysis, (2) pyBigWig to query a BigWig file and visualize…
May 6
•
Stephen Turner
Share this post
Paired Ends
uv, part 3: Python in R with reticulate
Copy link
Facebook
Email
Notes
More
Share
Copy link
Facebook
Email
Notes
More
This site requires JavaScript to run correctly. Please
turn on JavaScript
or unblock scripts