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Weekly Recap (Sep 2024, part 3)
What I'm reading this week in alignment and indexing millions of genomes at scale, gene age and family analysis and visualization, synthetic enhancers…
Create a free Llama 3.1 405B-powered chatbot on a GitHub repo in <1 min
How to create and deploy a free GPT4-class chatbot on HuggingFace Assistants for any GitHub repo, using an R package as an example, in less than 60…
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Weekly Recap (Sep 2024, part 2)
What I'm reading this week in protein design with AlphaProteo, biases in polygenic risk scores, scRNA-seq HVG selection, reconstruction of a 4.2 billion…
PLANES: Plausibility Analysis of Epidemiological Signals
PLANES provides a set of methods for evaluating the plausibility of epidemiological signals and forecasts. The PLANES methods are available in the…

August 2024

Weekly Recap (Sep 2024, part 1)
What I'm reading this week in de-extinction and patent law, ATAC-seq benchmarking, large animal genomes, SV genotyping with long reads, cell…
biorecap: an R package for summarizing bioRxiv preprints with a local LLM
The biorecap package summarizes bioRxiv preprints using a local LLM. I used two LLMs to help me write the package, and two other LLMs to help me write a…
What I'm reading (Aug 2024, part 4)
What I'm reading this week in single cell omics, spatial transcriptomics, kinship and selection inference in archaeogenomics, population and medical…
What I'm reading (Aug 2024, part 3)
What I'm reading this week in structural variant analysis, population/medical genetics, infectious disease modeling+forecasting, ML in single cell…
Use R to prompt a local LLM with ollamar
Using R to prompt llama3.1:70b running on my laptop with Ollama + ollamar to tell me what's interesting about a set of genes, and to summarize recent…
What I'm reading (Aug 2024, part 2)
What I'm reading this week in genomics, bioinformatics, cancer biology, epigenome editing, biosecurity, synthetic biology, single-cell omics, population…

July 2024

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