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Closing my tabs (Aug 29, 2025)
RAND corp AIxBio report, AI accelerating: GPT-4b for stem cell reprogramming; AI is slowing down; UVA SDS on Bluesky; LLMs and education; Python needs…
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Stephen Turner
Using OpenAI Codex in Positron
Developing an R package using the OpenAI Codex agent in Positron
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Stephen Turner
GitHub Repositories for Sequencing Companies
Using R and the GitHub API to get licensing information for GitHub repos for sequencing-related companies, one-shot with GPT-5.
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Stephen Turner
Closing my tabs (Aug 22, 2025)
Best AI for R, the weight of a cell, R+MCP, AI is a mass delusion event, AI hiring freezes, Quarto+Positron, biology moonshots, Julia for R users, AI…
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Stephen Turner
2
Weekly Recap (Aug 2025, part 4)
Genome annotation, viral genome clustering, metagenomic diagnostics, SV analysis on ONT reads, functional prediction, gene loss, DNA damage/repair…
Prejudicial Peer Review with AI
ChatGPT can be (mis)used to conduct scientific peer review with a predetermined outcome.
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Stephen Turner
3
Closing My Tabs: Aug 15 2025
Closing my browser tabs: papers, blogs, news stories, YouTube videos, tutorials, etc. from the world of data science + biotech
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Stephen Turner
1
Weekly Recap (Aug 2025, part 3)
De novo mutation rates from a 4-gen pedigree, how LLMs internalize scientific literature, pedigree and genetic data simulations, a review on predicting…
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Stephen Turner
Moving from biotech to academia
Thoughts and advice on transitioning from a career in industry biotech to academia. 1.4k words, 6 minute reading time.
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Stephen Turner
2
Weekly Recap (Aug 2025, part 2)
Metagenome assembly from nanopore reads, AI for single-cell analysis, GxE + epistasis in a vertebrate model, estimating GxE for polygenic traits…
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Stephen Turner
Ollama now has a GUI
Ollama's new app has a built-in user interface. It has a model selector, you can drop in files, and it supports multimodal and vision models like Gemma3…
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Stephen Turner
3
Vibe code is legacy code
Quoting Steve Krouse
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Stephen Turner
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