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uv, part 4: uv with Jupyter
Using uv with Jupyter: demo using polars and seaborn for analysis and visualization.
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Stephen Turner
Free AI courses from Google
Free short courses on GenAI, LLMs, responsible AI, image generation, encoder-decoder architectures, BERT, attention, transformers, ...
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Stephen Turner
Weekly Recap (June 2025, part 1)
PhyloSketch for drawing phylogenies, Uncalled4 for DNA/RNA modification detection, Severus for long read SV calling, CREsted for synthetic enhancer…
The Modern R Stack for Production AI
Python isn't the only game in town anymore: R can interact with local and cloud LLM APIs, inspect and modify your local R environment and files…
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Stephen Turner

May 2025

Weekly Recap (May 2025, part 3)
Polars-bio, LiftOn, feature selection for scRNA-seq, STRkit for genotyping STRs with long reads, nf-core/detaxizer, Uncalled4, RegionScan, CREsted…
Writing a book with Quarto
Turn a collection of RMarkdown documents into a book in <1 hour using Quarto
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Stephen Turner
Weekly Recap (May 2025, part 2)
Comprehensive evolutionary modeling of human gene function, an AI reasoning model for rare disease diagnosis, an AI agent for scRNA-seq data…
uv, part 3: Python in R with reticulate
Two demos using Python in R via reticulate+uv: (1) Hugging Face transformers for sentiment analysis, (2) pyBigWig to query a BigWig file and visualize…
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Stephen Turner
Weekly Recap (May 2025, part 1)
Methods in genetic epidemiology, privacy-preserving methods for QTL and GWAS analysis, family-based GWAS, lots of Nextflow for PGS construction…

April 2025

Listen to papers, PDFs, and articles with ElevenReader
ElevenReader (free for iOS/Android) will read articles and PDFs in realistic voices. Example clips here with Burt Reynolds, Maya Angelou, and Richard…
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Stephen Turner
Weekly Recap (April 2025, part 2)
Effector genes at GWAS hits, protein evolution, regulatory variant prediction, gene/genome duplication analysis, genomic foundation models, Nextflow…
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Stephen Turner
R 4.5.0 and Bioconductor 3.21
Faster package installation, import only the functions you want with use(), built-in Palmer penguins data, grep values shortcut, and lots of new…
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Stephen Turner
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