Python

uv, part 2: building and publishing packages

Using uv to create, manage, build, and publish a Python package to PyPI

Mar 24

uv, part 1: running scripts and tools

Over the past year I’ve heard a lot great things about uv, an extremely fast Python package and project manager, written in Rust.

Mar 3

Turn a GitHub repo into a single text file for LLM-friendly input

The open source repo2txt web app will take a GitHub repo URL, displays the directory structure, lets you choose which files to include, and provides a…

Dec 9, 2024

TIL: dplyr::mutate()'s .keep argument

Use the .keep argument in dplyr::mutate() to control which variables to retain after mutating to create new variables.

Dec 2, 2024

Tech I'm thankful for (2024)

Data science and bioinformatics tech I'm thankful for in 2024: tidyverse, RStudio, Positron, Bluesky, blogs, Quarto, bioRxiv, LLMs for code, Ollama…

Nov 25, 2024

Build a Python CLI with Click+Cookiecutter

Demonstration for how to build a Python command line utility with Click using a Cookiecutter project template, and how to publish to PyPI and Docker Hub

Nov 10, 2024

Python for R users

A Google search for “R vs Python” returns thousands of hits across sites like Reddit, IBM, Datacamp, Coursera, Kaggle, and many others.

Oct 21, 2024

AI code completion in Positron

Positron doesn't have GitHub Copilot, but Codeium and others are good alternatives.

Oct 1, 2024

#nojs-banner { position: fixed; bottom: 0; left: 0; padding: 16px 16px 16px 32px; width: 100%; box-sizing: border-box; background: red; color: white; font-family: -apple-system, "Segoe UI", Roboto, Helvetica, Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol"; font-size: 13px; line-height: 13px; } #nojs-banner a { color: inherit; text-decoration: underline; } This site requires JavaScript to run correctly. Please turn on JavaScript or unblock scripts