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uv, part 3: Python in R with reticulate
Two demos using Python in R via reticulate+uv: (1) Hugging Face transformers for sentiment analysis, (2) pyBigWig to query a BigWig file and visualize…
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Stephen Turner
uv, part 2: building and publishing packages
Using uv to create, manage, build, and publish a Python package to PyPI
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Stephen Turner
uv, part 1: running scripts and tools
Over the past year I’ve heard a lot great things about uv, an extremely fast Python package and project manager, written in Rust.
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Stephen Turner
Turn a GitHub repo into a single text file for LLM-friendly input
The open source repo2txt web app will take a GitHub repo URL, displays the directory structure, lets you choose which files to include, and provides a…
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Stephen Turner
TIL: dplyr::mutate()'s .keep argument
Use the .keep argument in dplyr::mutate() to control which variables to retain after mutating to create new variables.
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Stephen Turner
Tech I'm thankful for (2024)
Data science and bioinformatics tech I'm thankful for in 2024: tidyverse, RStudio, Positron, Bluesky, blogs, Quarto, bioRxiv, LLMs for code, Ollama…
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Stephen Turner
Build a Python CLI with Click+Cookiecutter
Demonstration for how to build a Python command line utility with Click using a Cookiecutter project template, and how to publish to PyPI and Docker Hub
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Stephen Turner
Python for R users
A Google search for “R vs Python” returns thousands of hits across sites like Reddit, IBM, Datacamp, Coursera, Kaggle, and many others.
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Stephen Turner
AI code completion in Positron
Positron doesn't have GitHub Copilot, but Codeium and others are good alternatives.
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Stephen Turner
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