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Weekly Recap (Nov 21, 2025)
R updates (R Data Scientist, R weekly)
Nov 21
•
Stephen Turner
2
Weekly Recap (Nov 14, 2025)
posit::conf(2025) & Nextflow Summit talks, bioRxiv+medRxiv AI reviews, R updates (R Data Scientist, R weekly), Claude Scientific Skills, Python package…
Nov 14
•
Stephen Turner
6
posit::conf(2025) talks on YouTube
Over 100 recorded talks from posit::conf(2025) are now available on YouTube
Nov 10
•
Stephen Turner
2
Closing my tabs (Sep 5 2025)
NIH budget, AI, R, Bluesky & Science, state of biotech, AI in higher ed, R packages Top 40, structural variation, statistical power, Python documentary…
Sep 5
•
Stephen Turner
2
uv, part 4: uv with Jupyter
Using uv with Jupyter: demo using polars and seaborn for analysis and visualization.
Jun 23
•
Stephen Turner
1
uv, part 3: Python in R with reticulate
Two demos using Python in R via reticulate+uv: (1) Hugging Face transformers for sentiment analysis, (2) pyBigWig to query a BigWig file and visualize…
May 6
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Stephen Turner
uv, part 2: building and publishing packages
Using uv to create, manage, build, and publish a Python package to PyPI
Mar 24
•
Stephen Turner
uv, part 1: running scripts and tools
Over the past year I’ve heard a lot great things about uv, an extremely fast Python package and project manager, written in Rust.
Mar 3
•
Stephen Turner
2
Turn a GitHub repo into a single text file for LLM-friendly input
The open source repo2txt web app will take a GitHub repo URL, displays the directory structure, lets you choose which files to include, and provides a…
Dec 9, 2024
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Stephen Turner
TIL: dplyr::mutate()'s .keep argument
Use the .keep argument in dplyr::mutate() to control which variables to retain after mutating to create new variables.
Dec 2, 2024
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Stephen Turner
Tech I'm thankful for (2024)
Data science and bioinformatics tech I'm thankful for in 2024: tidyverse, RStudio, Positron, Bluesky, blogs, Quarto, bioRxiv, LLMs for code, Ollama…
Nov 25, 2024
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Stephen Turner
Build a Python CLI with Click+Cookiecutter
Demonstration for how to build a Python command line utility with Click using a Cookiecutter project template, and how to publish to PyPI and Docker Hub
Nov 10, 2024
•
Stephen Turner
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