Papers

Weekly Recap (Oct 31, 2025)

AI in science, Quarto, biodiversity, changed grant titles, new papers & preprints, Nextflow plugin registry, Via Scientific, R updates from R Data…

Oct 31 •

Weekly recap (Oct 24, 2025)

Polyglot data science pipeline (R+Python+Julia) with rixpress, EuroBioC2025/BCN, Python packaging for R devs, Python in 2025, R/Pharma, DARPA, ASHG, the…

Oct 24 •

Weekly recap (Oct 17, 2025)

Bioconductor on GPUs, tidyomics, Quarto 1.8, Anthropic red-teaming on AIxBio, PGS in the clinic, Shock Doctrine in genome engineering, GenAI for data…

Oct 17 •

Asymmetries in Biosecurity

RAND Report: Why biology still favors the offense in biosecurity

Oct 15 •

Weekly recap (Oct 10, 2025)

AI x biosecurity, R updates (Blaze, RWeekly, R Consortium), genome engineering & conservation, AI & labor, RAG, Lost Science, AI in medicine, ggplot2…

Oct 10 •

Weekly recap (Oct 3, 2025)

R updates (from rOpenSci, Blaze, R Works, RWeekly, Posit), Slidecrafting, AI highs & lows, structural variation, biotech, RAG, tinytable, "vibe work…

Oct 3 •

Weekly recap (Sep 26, 2025)

Apple gets into protein folding, parsing R/Markdown and Quarto, vibe-coding an R package, AI in biosecurity and writing, nothing about AI is inevitable…

Sep 26 •

Weekly recap (Sep 19, 2025)

AI-generated genomes, R news for my posit::conf() FOMO, biosecurity, mirror life, teaching and AI, ELSI for AI, in defense of CRAN, Anthropic Economy…

Sep 19 •

Closing my tabs (Sep 12, 2025)

AI in academia, $1B NSF cut, AI+biosecurity, bacterial DNA from mammoth bones, understanding LLMs and their math, bioacoustics for conservation…

Sep 12 •

Weekly Recap (Sep 2025 part 1)

Biobank-scale relatedness estimation, SNP calling and phasing with long RNA-seq reads, predicting expression-altering promoter mutations with DL…

Sep 2 •

Weekly Recap (Aug 2025, part 4)

Genome annotation, viral genome clustering, metagenomic diagnostics, SV analysis on ONT reads, functional prediction, gene loss, DNA damage/repair…

Aug 21

Closing My Tabs: Aug 15 2025

Closing my browser tabs: papers, blogs, news stories, YouTube videos, tutorials, etc. from the world of data science + biotech

Aug 15 •

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