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Weekly Recap (Jan 2025 part 2)
Autonomous microbial sensors for detecting TNT in soil, genome size estimation from long reads, indexing + compressing GWAS summary stats, Clair3-RNA…
Weekly Recap (Jan 2025, part 1)
Directed evolution by a protein language model, AI learning to run transcript assemblers, a review/introduction to pangenomics, Alphafold2 refinement…
Weekly Recap (Dec 2024, part 3)
The Evo model for sequence modeling and design, AI agents in biomedical research, improving bioinfo software with teamwork, VCF manipulation, GWAS…
Weekly Recap (Dec 2024, part 2)
Nextflow to web apps, variant analysis with DRAGEN, synthetic cis-regulatory elements, Nextflow for kinase ID+characterization, language model for…
Weekly Recap (Dec 2024, part 1)
WorkflowHub computational workflow registry, building a virtual cell with AI, bioinformatics for prioritizing causal variants, DL methods for nanopore…
Weekly Recap (Nov 2024, part 3)
Pangenome graph construction with nf-core/pangenome, pangenome graphs, single cell multi-omics, RNA foundation models, Nextflow for B-cell receptor…
Weekly Recap (Nov 2024, part 2)
What I'm reading in agentic multiomic analysis, metagenome profiling, GWAS beyond SNPs, private information leakage from scRNA-seq, unlearning viral…
Weekly Recap (Nov 2024, part 1)
Nextflow for metagenomics QA & taxonomic classification, SNP/SV benchmarking, SNV calling with nanopore data, assembly polishing with transformers…
Weekly Recap (Oct 2024, part 4)
Protein design with RoseTTAFold, wastewater sequencing T2T human genomes, single-cell spatial transcriptomics, taxonomic classification, ...
Weekly Recap (Oct 2024, part 3)
Nextflow workflow for polygenic scoring, WES+imputation > WGS, DL method for splice site prediction, metagenomics profiling, and a new NIST/GIAB matched…
Inciteful+Zotero to find relevant literature
Listen now | Inciteful with the Zotero plugin is the perfect combo for filling in gaps in your knowledge of the literature in a particular field…
12:21
Weekly Recap (Oct 2024, part 2)
Gene-level alignment of scRNA-seq trajectories, integrating identifiers across databases, SVs in humans and apes, universal prediction of cellular…
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