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Weekly Recap (April 2025, part 2)
Effector genes at GWAS hits, protein evolution, regulatory variant prediction, gene/genome duplication analysis, genomic foundation models, Nextflow…
Weekly Recap (April 2025, part 1)
Evo2, genomic foundationless models, the ggalign R package, ancestral reconstruction for ancient DNA, biodiversity genomics reviews, structural…
Weekly Recap (March 2025, part 2)
AI agents for biomedical reasoning, species tree inference, a spatial transcriptomics foundation model, biomedical research with LLMs, mapping cells…
Weekly Recap (March 2025, part 1)
Heritable polygenic editing, self-supervised learning in single-cell genomics, predictive modeling with tabular foundation models, ESM3, pangenome…
Weekly Recap (Feb 2025, part 3)
T2T assembly, DNA language models for variant effect analysis, ortholog inference at scale, a foundation model of transcription across cell types…
Weekly Recap (Feb 2025, part 2)
Predicting RNA-seq coverage from DNA sequence with Borzoi, doing it faster with Flashzoi, phylogenetic inference from structure, prioritization in GWAS…
Weekly Recap (Feb 2025, part 1)
Neuropsychiatric PGS don't predict professional categories, pangenome graph-based GWAS, building and using single cell atlases, sketching sketching in…
Weekly Recap (Jan 2025 part 3)
Visualizing pathogen dispersal, DNA language model benchmarks for regulatory DNA, polygenic risk prediction with GWAS summary stats, multimodal analysis…
Weekly Recap (Jan 2025 part 2)
Autonomous microbial sensors for detecting TNT in soil, genome size estimation from long reads, indexing + compressing GWAS summary stats, Clair3-RNA…
Weekly Recap (Jan 2025, part 1)
Directed evolution by a protein language model, AI learning to run transcript assemblers, a review/introduction to pangenomics, Alphafold2 refinement…
Weekly Recap (Dec 2024, part 3)
The Evo model for sequence modeling and design, AI agents in biomedical research, improving bioinfo software with teamwork, VCF manipulation, GWAS…
Weekly Recap (Dec 2024, part 2)
Nextflow to web apps, variant analysis with DRAGEN, synthetic cis-regulatory elements, Nextflow for kinase ID+characterization, language model for…
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